PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2045620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 223aa    MW: 25288.1 Da    PI: 8.1397
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2045620.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP67.93.5e-21110738133
              TCP  38 eLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg...............kaaksaakskksqksaasalnla 111
                      +L fdk+s+t+eWL+++++ ai+el+++     ss+s+++ +++++         +                + +s+ k   +++++ ++l+ +
  Lj5g3v2045620.1   1 MLEFDKPSNTLEWLFTKSESAIQELARSkncscSSNSNNNPSNNNK---------SlfgggdnhngtnsirGRGNSKLKWTTQRDQDVCVLQNK 85 
                      89**************************555441112211112222.........133334444456777577777779*************** PP

              TCP 112 kesrakarararertrekmrik 133
                      kesr++arararert  km  +
  Lj5g3v2045620.1  86 KESRERARARARERTCYKMLED 107
                      ******************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-151104IPR005333Transcription factor, TCP
PROSITE profilePS5136916.572125IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.64386103IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLEFDKPSNT LEWLFTKSES AIQELARSKN CSCSSNSNNN PSNNNKSLFG GGDNHNGTNS  60
IRGRGNSKLK WTTQRDQDVC VLQNKKESRE RARARARERT CYKMLEDQRC PANTTQIMHQ  120
LRSSSPIQLL QPYPHLMDNS EAVSGGGGGD GFNVIEESIM IKRNMMSSNS HPHENHHLAI  180
PNKEAGFNNN YIDYPLLQPY STTPNWEIAT MNMNLSTCFM NQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18898RERARARARER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104410.0AP010441.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT32M13, TM1651, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606066.13e-48PREDICTED: transcription factor DICHOTOMA-like
TrEMBLQ1WK561e-168Q1WK56_LOTJA; CYC3
STRINGGLYMA20G28670.15e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Publications ? help Back to Top
  1. Feng X, et al.
    Control of petal shape and floral zygomorphy in Lotus japonicus.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 4970-5
    [PMID:16549774]